Python Usage

One the models for NucleoFind are installed, NucleoFind is ready to run. Use this Python syntax to predict nucleic acid positions from density.

Command

Syntax to run a prediction:

            import nucleofind as nf

            nf.predict_map("core", "data/ref.mtz", "data/nucleic-acids", amplitude = "FWT", phase = "PHWT", overlap=16)

The output will be a folder of name data/nucleic-acids containing three CCP4 maps named:

nucleofind-phosphate.map
nucleofind-sugar.map
nucleofind-base.map

The signature of the function is shown below:

        def predict_map(model: str, input: str, output: str, resolution: float = 2.5, amplitude: str = "FWT",
        phase: str = "PHWT", overlap: float = 16):
        

Last modified: 02 January 2025