Model Glycan from WURCS Code
Last modified: 23 November 2024Sails provides a utility tool to model a glycan into a structure from a known WURCS code and a root residue. This may be useful to glycosylate predicted models or as a simple starting point for manual model building. The glycan is placed with the mean torsion angles for a given linkage.
Command
Syntax:
sails-wurcs model [OPTIONS]Example:
sails-wurcs model -modelin structure.cif -wurcs "WURCS=2.0/..." -chain A -seqid 123Options
Describe what each option is used for:
- -modelin
Path to a model.
Formats accepted: CIF or PDB
Required
- -modelout
Path to the glycosylated output model.
Formats accepted: CIF or PDB
Default: sails-model-out.cif
- -wurcs
WURCS code of glycan to model.
Must be in standard form without open chains and without circular glycans.
- -chain
Chain name containing desired root residue
Example: A
- -seqid
Sequence Id of the root residue of the future glycan (e.g. asparagine for an N-glycan)
Example: 123
- -h, --help
Displays help.