Find WURCS Codes
Sails provides a utility tool to find the WURCS code of a glycan in a macromolecule. A single WURCS code can be generated for a known glycosite or all can be generated. These codes can be used to search glycomics databases.
Command
Syntax:
sails-wurcs find [OPTIONS]
Example:
sails-wurcs find -modelin structure.cif -chain A -seqid 123
sails-wurcs find -modelin structure.cif -all -logout all_wurcs.json
Options
Describe what each option is used for:
- -modelin
Path to a model.
Formats accepted: CIF or PDB
Required
- -logout
Path to output JSON file
Default: wurcs.json
- --all
Ignore chain and seqid, and generate WURCS codes for all glycans that can be found for the input model
- -chain
Chain name containing the root protein residue
Example: A
- -seqid
Sequence Id of the root protein residue of a glycan (e.g. asparagine for an N-glycan)
Example: 123
- -h, --help
Displays help.
Last modified: 23 November 2024