Automated Glycan Building in Electron Microscopy

Command

Syntax:

Example:

Options

Describe what each option is used for:

-modelin

Path to input model file.

Formats accepted: PDB, mmCIF, CIF

Required

-mapin

Path to input map (may be gzipped).

Formats accepted: ccp4, map, mrc

Required

-modelout

Path to output CIF file.

Default: sails-model-out.cif

-logout

Path to output MTZ file.

Default: sails-log.json

-snfgout

Path to output SNFG directory.

-cycles

Number of internal cycles to run.

Default: 2

-type

Type of glycosylation

Options:

• n-glycosylate

• c-glycosylate

• o-mannosylate

Default: n-glycosylate

-v

Verbose output

-h

Displays help.

--version

Displays version.