Find Glycosylation SItes
Sails provides a utility tool to find potential glycosylation sites in a given structure. Sails will search for N-glycosylation sites following the consensus sequence N-X-S/T where X is not proline, as well as for C-glycosylation sites following the consensus sequence W-X-X-W. The tool will output a JSON file with the residues that follow the respective motifs.
Command
Syntax:
sails-find [OPTIONS]
Example:
sails-find -modelin built.cif -logout potential_sites.json
Options
Describe what each option is used for:
- -modelin
Path to a model that requires comparison to a reference.
Formats accepted: CIF or PDB
Required
- -logout
Path to output JSON file
Default: sites.json
- -h, --help
Displays help.
Last modified: 23 November 2024