Generate SNFG Diagrams
Sails provides a fast utility tool to generate SNFG diagrams using Sails' internal diagram engine. A specific site can be specified with -chain and -seqid parameters, or, all the detectable SNFGs will be generated.
Command
Syntax:
sails-snfg [OPTIONS]
Example for one site:
sails-snfg -model built.cif -chain A -seqid 23 -snfgout snfg.svg
Example for all sites:
sails-snfg -model built.cif --all -snfgout snfgs
Options
Describe what each option is used for:
- -model
Path to a model that requires comparison to a reference.
Formats accepted: CIF or PDB
Required
- -snfgout
Path to output SNFG(s)
Supply a directory if using --all, otherwise a path to an SVG file
Required
- --all
Ignore chain and seqid, and generate all SNFGs that can be found for the input model
- -chain
Chain name
Example: A
- -seqid
Sequence Id of desired SNFG root
Example: 123
Last modified: 08 August 2024