Morph Glycan
Sails provides a utility tool to morph a modelled glycan into another form using a supplied WURCS code. The new glycan will be superimposed onto the modelled glycan and may be useful to morph a high-mannose N-glycan into a more processed kind, for example.
Command
Syntax:
sails-morph [OPTIONS]
Example:
sails-morph -modelin structure.cif -chain A -seqid 123 -wurcs "WURCS=2.0/..."
Options
Describe what each option is used for:
- -modelin
Path to a model.
Formats accepted: CIF or PDB
Required
- -modelout
Path to the morphed output model.
Formats accepted: CIF or PDB
Default: sails-model-out.cif
- -wurcs
WURCS code of glycan to model.
Must be in standard form without open chains and without circular glycans.
- -chain
Chain name containing the root protein residue
Example: A
- -seqid
Sequence Id of the root protein of the glycan (e.g. asparagine for an N-glycan)
Example: 123
- -h, --help
Displays help.
Last modified: 23 November 2024